2930 次代码提交

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作者	SHA1	备注	提交日期
nmannall	ad50e2ff91	Update documentation for VtkHdfFile and VtkImageData	2024-11-08 12:12:19 +00:00
nmannall	d0cc25506a	Add validation to ensure vtkImageData files are 3D	2024-11-01 18:03:40 +00:00
nmannall	3bffeb6450	Change GeometryViewVoxel to use VTKHDF file format	2024-11-01 16:10:11 +00:00
nmannall	e8051bc72d	Use numpy arrays to store geometry view extents	2024-11-01 16:07:17 +00:00
nmannall	2eb54832d7	Create class to write VTKHDF Image Data files	2024-11-01 16:02:27 +00:00
nmannall	3e575d9c4d	Use np.single dtype rather than float	2024-11-01 15:55:36 +00:00
nmannall	15e8eb0e73	Fix model title not being broadcast to all ranks	2024-10-11 13:56:46 +01:00
nmannall	1ad7ed64da	Replace deprecated warn method with warning	2024-10-04 16:41:55 +01:00
nmannall	bea6f12da6	Fix MPI regresssion tests not finding dependency	2024-09-26 18:18:38 +01:00
nmannall	bb5832b042	Add new snapshot tests at MPI boundaries	2024-09-26 18:16:23 +01:00
nmannall	9d13d5a495	Update snapshot regression files with new discretisations	2024-09-26 18:14:22 +01:00
nmannall	9dd0d1b255	Add validation for snapshots to fix out of bounds memory access	2024-09-26 18:13:05 +01:00
nmannall	aef7737299	Change mpi and taskfarm flags to use -- convention	2024-08-16 15:49:20 +01:00
nmannall	93dadd9f1e	Reformat long strings in contexts.py	2024-08-16 15:32:34 +01:00
nmannall	c288e8eb7c	Add docstrings to all MPIGrid and FDTDGrid methods	2024-08-16 14:47:45 +01:00
nmannall	89873a5963	Fix bug when rank only contains the final snapshot step	2024-08-06 13:46:11 +01:00
nmannall	9a4d576284	Add additional Snapshot tests (2D slices of 3D model)	2024-08-06 13:44:37 +01:00
nmannall	d4276e44f9	Add has_neighbour helper method	2024-08-05 15:53:26 +01:00
nmannall	33670b3bd1	Merge branch 'devel' into mpi	2024-08-05 15:31:40 +01:00
nmannall	4b9bd26a4d	Add reframe tests for Snapshots	2024-08-05 15:29:39 +01:00
nmannall	320b813f8d	Run h5diff command in reframe sanity function	2024-08-02 13:53:28 +01:00
Craig Warren	9107179d5a	Fixed bug with start/end/thickness of cylindrical sector	2024-07-24 15:13:56 +01:00
nmannall	87d4d63a38	Regenerate regression tests after PML precision change	2024-07-24 13:28:23 +01:00
nmannall	bef3b8e6bd	Change pml cython functions to double precision ... Reduces numerical differences between serial and MPI implementation	2024-07-24 10:33:44 +01:00
nmannall	70960f38b8	Fix typo in source directory	2024-07-24 10:33:10 +01:00
nmannall	8f336d9de0	Add reference data to output plot and plot diffs	2024-07-24 10:13:22 +01:00
nmannall	7d97ebcd81	Move regression checks folder to correct location	2024-07-24 10:06:42 +01:00
nmannall	43e9390b8d	Split reframe tests into multiple files	2024-07-23 15:24:59 +01:00
nmannall	e7eaba53df	Add comments to all methods	2024-07-23 15:23:46 +01:00
nmannall	05cfc6403b	Move reframe test files into seperate directory	2024-07-23 14:36:10 +01:00
nmannall	bec547f201	Throw exception if unknown grid type	2024-07-18 17:38:06 +01:00
nmannall	960ced4761	Implement Snapshots for MPI ... Works, except for small errors in the corners of 2D models. Requires further investigation.	2024-07-18 17:33:27 +01:00
nmannall	5c9d59d7d1	Fix wrong grid coord when coordinate at edge of grid ... When the global coordinate was in the far edge of the grid, the returned grid coordinate would be one more than the maximum in at least one dimension resulting in comm.Get_cart_rank failing.	2024-07-18 17:17:16 +01:00
nmannall	b8e7a3b3ca	Update dtype and type hints for numpy arrays	2024-07-18 17:10:39 +01:00
nmannall	63042ab0ad	Remove default value from GridType	2024-07-18 17:06:01 +01:00
nmannall	cd078dbfc4	Add some type hints	2024-07-18 17:05:07 +01:00
nmannall	7d0321715f	Fix snapshots always defaulting to .vti files	2024-07-18 17:03:29 +01:00
nmannall	8af024b496	Move test input files into folders ... Reduces the number of unnecessary files present in the test stage and output directories.	2024-07-16 12:10:43 +01:00
nmannall	ddf4a97e5b	Log materials table clearer with debug log level	2024-07-15 16:43:33 +01:00
nmannall	e5051912ef	Save output files from each rank in a folder	2024-07-15 16:42:47 +01:00
nmannall	de952f2bed	Fix ID array not being distributed to MPI ranks	2024-07-15 16:25:20 +01:00
nmannall	f3c1c17ff7	Change materials table to Ascii as displays better ... SingleTable does not display well in log files or if stdout is redirected to a text file	2024-07-12 16:55:37 +01:00
nmannall	147f7860c3	Tidy up logging (mainly for log files/debug level)	2024-07-12 16:54:13 +01:00
nmannall	d1755e9474	Fix checking memory requirements twice in MPIModel	2024-07-12 16:51:22 +01:00
nmannall	f21c281bac	Use colorama to control logging colours	2024-07-12 16:50:14 +01:00
nmannall	8052d2a448	Add controls for MPI logging	2024-07-12 16:49:22 +01:00
nmannall	ba2edbf3d3	Turn off progress bars for non-rank 0 processes	2024-07-12 16:32:02 +01:00
nmannall	8467ee5dfa	Change logger.exception to logger.error ... logger.exception is designed to be used inside an exception handler as the exception info is added to the logging message.	2024-07-12 14:59:28 +01:00
nmannall	e99e1b304b	Split test output by rank and add some debug info	2024-07-09 15:03:39 +01:00
nmannall	642db458e2	Add overrides to show or hide progress bars	2024-07-04 12:36:24 +01:00