Nathan Mannall
fa93dafcaf
Actually wait for Isend calls to distribute material IDs
2025-06-19 15:15:55 +01:00
Nathan Mannall
0d0615c164
Add factory functions to grids for fractal surfaces
2025-06-19 15:15:55 +01:00
nmannall
cb1ecd8d9b
Seperate write and read geometry object tests
2025-06-19 15:15:55 +01:00
Nathan Mannall
5f6656741b
Use asynchronous MPI calls for halo exchanges
2025-06-19 15:15:55 +01:00
Nathan Mannall
742678b705
Add some missing type hints
2025-06-19 15:15:54 +01:00
Nathan Mannall
8c15235f37
Add factory functions to grids for fractal volumes
2025-06-19 15:15:54 +01:00
Nathan Mannall
5ee013d9fe
Create shared MPI fractal functions
2025-06-19 15:15:54 +01:00
Nathan Mannall
548cf6599b
Remove add_surface_roughness_half test
...
- The functionality this tested is better tested by the new
add_surface_roughness_boundaries test
2025-06-19 15:15:54 +01:00
Nathan Mannall
17c05f5286
Fix bug when fractal surfaces at an MPI boundary
...
- Add a new test that better tests this scenario
2025-06-19 15:15:54 +01:00
Nathan Mannall
b73cd93d75
Fix bug when modifications applied to multiple fractal boxes
2025-06-19 15:15:54 +01:00
Nathan Mannall
33f8e097c8
Remove 'fractal_box_half' test
...
- The functionality this was supposed to test is better covered by the
new 'fractal_box_boundaries' test
2025-06-19 15:15:54 +01:00
Nathan Mannall
0c7c5447a3
Fix bug where fractal box at MPI boundary
2025-06-19 15:15:54 +01:00
Nathan Mannall
34188f8f3d
Update add_grass user object for parallel build
2025-06-19 15:15:54 +01:00
Nathan Mannall
ed76cfa4c6
Remove use of logger.exception outside try except block
2025-06-19 15:15:54 +01:00
Nathan Mannall
56fff1c38b
Fix bug when original_stop is less than original_start
...
- Add properties to access and set originalxs etc
- If original_stop is less than original_start (e.g. when both are less
than the lower extent of the local grid), it could cause the values of
maskxs etc in generate_volume_mask to be negative. This could cause
incorrect slicing of self.mask
2025-06-19 15:15:54 +01:00
Nathan Mannall
cdc209d90a
Update add_surface_water for parallel build
2025-06-19 15:15:54 +01:00
Nathan Mannall
88a4592764
Add MPI test for add_surface_water user object
2025-06-19 15:15:54 +01:00
Nathan Mannall
dd70f06b7b
Remove use of logger.exception outside try except block
2025-06-19 15:15:54 +01:00
Nathan Mannall
80db43bf6b
Limit original start and stop to local grid
...
- Remove unnecessary redefinition of original start and stop
2025-06-19 15:15:54 +01:00
Nathan Mannall
3a6f459179
Add MPIFractalSurface class
2025-06-19 15:15:54 +01:00
Nathan Mannall
51abdf31c0
Check if fractal volume starts beyond upper bound
2025-06-19 15:15:54 +01:00
Nathan Mannall
4882927c4b
Add new MPI surface roughness geometry tests
2025-06-19 15:15:54 +01:00
Nathan Mannall
5c5c865064
Remove unnecessary initialisation of offset
2025-06-19 15:15:54 +01:00
Nathan Mannall
bf11148370
Always run receiver regression tests last
...
This means regression checks for geometry objects etc will run (and
potentially fail) first. This is useful as those regression tests give
more information as to what has gone wrong that the receiver regression
tests.
2025-06-19 15:15:54 +01:00
Nathan Mannall
6bad4149f7
Move fractal objects into seperate files
2025-06-19 15:15:54 +01:00
Nathan Mannall
857d9b6e54
Create fractals folder
2025-06-19 15:15:54 +01:00
Nathan Mannall
93902ea36e
Create tests for add_grass user object
2025-06-19 15:15:53 +01:00
Nathan Mannall
3f9e7ab72b
Add properties to access start, stop and size
2025-06-19 15:15:53 +01:00
Nathan Mannall
c6358d2c05
Output metadata in serial so VLEN strings can be used
2025-06-19 15:15:53 +01:00
Nathan Mannall
493db241d7
Remove shifting zero frequency from fractal surfaces
2025-06-19 15:15:53 +01:00
Nathan Mannall
a75ab2c01f
Allow users to specify mode to open VTKHDF files
2025-06-19 15:15:53 +01:00
Nathan Mannall
2c8c14c73d
Correct shifting of positional vector
2025-06-19 15:15:53 +01:00
Nathan Mannall
12477223b3
Use variable length strings in VTKHDF files
2025-06-19 15:15:53 +01:00
Nathan Mannall
c57f24536d
Remove test case designed to fail
2025-06-19 15:15:53 +01:00
Nathan Mannall
fc547ab75e
Create add_surface_water regression tests
2025-06-19 15:15:53 +01:00
Nathan Mannall
1deb32cdb3
Add properties to access start, stop, and size
2025-06-19 15:15:53 +01:00
Nathan Mannall
49ed537bda
Fix bug when comparing materials
...
- The functions for comparing materials assumed non compound materials
always have a numerical ID less than compound materials. This is
usually true, but not always. E.g. when using the add_surface_water
user object. This can create the 'water' material after compound
materials have been created by a fractal box
2025-06-19 15:15:53 +01:00
Nathan Mannall
540207871e
Improve variable names and documentation
2025-06-19 15:15:53 +01:00
Nathan Mannall
4d061ef91f
Add add_surface_roughness tests
2025-06-19 15:15:53 +01:00
Nathan Mannall
4570aa4d09
Consolidate MPIFractalVolume implementation
2025-06-19 15:15:53 +01:00
Nathan Mannall
ecac327840
Use MPI datatypes to distribute fractal volumes
2025-06-19 15:15:53 +01:00
Nathan Mannall
7f64987832
Remove GridView from MPIFractalVolume
...
- Add initial implementation to redistribute the fractal volume to the
correct rank
2025-06-19 15:15:53 +01:00
Nathan Mannall
adb357c2cc
Initial MPIFractalBox implementation
2025-06-19 15:15:53 +01:00
Nathan Mannall
eb88b954af
Update MPI fractal box tests
2025-06-19 15:15:53 +01:00
Nathan Mannall
6cc70afb6e
Remove shifting of zero frequency component
...
- Rather than directly shifting the zero frequency component of the fft,
generate_fractal3D shifts the positional vector of each index as if
the zero frequency had been shifted to the centre
- Changing generate_fractal3D to do this will make the MPI
implementation easier
2025-06-19 15:15:53 +01:00
Nathan Mannall
5b5a325c23
Correct regression check file for fractal_box_half
2025-06-19 15:15:52 +01:00
Nathan Mannall
8a204e5f9d
Add geometry objects to fractal box tests
2025-06-19 15:15:52 +01:00
Nathan Mannall
d68d1d4973
Add new fractal box tests
2025-06-19 15:15:51 +01:00
Craig Warren
e986fdb093
MPI RTD
2025-05-30 21:28:10 +01:00
Craig Warren
1d301b7509
Try other MPI for RTD
2025-05-30 21:22:58 +01:00
