Updated index structure.

docs/source/examples_advanced.rst

@@ -7,7 +7,7 @@ This section provides example models of some of the more advanced features of gp
 Building a heterogeneous soil
 =============================
 
-:download:`heterogeneous_soil.in <models/heterogeneous_soil.in>`
+:download:`heterogeneous_soil.in <../../user_models/heterogeneous_soil.in>`
 
 This example demonstrates how to build a more realistic soil model using a stochastic distribution of dielectric properties. A mixing model for soils proposed by Peplinski (http://dx.doi.org/10.1109/36.387598) is used to define a series of dispersive material properties for the soil.
 

docs/source/features.rst

@@ -75,7 +75,7 @@ Retired commands
 Commands yet to be implemented
 ------------------------------
 
-There are commands from previous versions of gprMax that are planned for this version, but are yet to be implemented. These will be introduced in a future update. They are: ``#thin_wire``, ``#transmission_line``, and ``#plane_wave``.
+There are commands from previous versions of gprMax that are planned for this version, but are yet to be implemented. These will be introduced in a future update. They are``#thin_wire`` and ``#plane_wave``.
 
 
 Migrating old input files

docs/source/index.rst

@@ -21,7 +21,7 @@ gprMax User Guide
 
 .. toctree::
     :maxdepth: 2
-    :caption: Tools
+    :caption: Additional tools
 
     plotting
     utils
@@ -31,7 +31,6 @@ gprMax User Guide
     :caption: Advanced topics
 
     openmp_mpi
-    optimisation
 
 .. toctree::
     :maxdepth: 2

docs/source/optimisation.rst

@@ -1,12 +0,0 @@
-.. _optimsation:
-
-************
-Optimisation
-************
-
-This section will explain how to use an optimisation algorithm with gprMax.
-
-Taguchi's method
-================
-
-