Changed 'field' terminology to 'output'.

这个提交包含在:
Craig Warren
2016-01-12 17:23:33 +00:00
父节点 dea93b61f7
当前提交 10e889bfb0
共有 2 个文件被更改,包括 85 次插入59 次删除

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@@ -20,19 +20,20 @@ import os, argparse
import h5py
import numpy as np
import matplotlib.pyplot as plt
import matplotlib.gridspec as gridspec
from gprMax.exceptions import CmdInputError
"""Plots electric and magnetic fields from any receiver points in the given output file. Each receiver point is plotted in a new figure window."""
"""Plots electric and magnetic fields and currents from all receiver points in the given output file. Each receiver point is plotted in a new figure window."""
# Fields that can be plotted
fieldslist = ['Ex', 'Hx', 'Ey', 'Hy', 'Ez', 'Hz']
# Outputs that can be plotted
outputslist = ['Ex', 'Ey', 'Ez', 'Hx', 'Hy', 'Hz', 'Ix', 'Iy', 'Iz']
# Parse command line arguments
parser = argparse.ArgumentParser(description='Plots electric and magnetic fields from all receiver points in the given output file. Each receiver point is plotted in a new figure window.', usage='cd gprMax; python -m tools.plot_Ascan outputfile')
parser = argparse.ArgumentParser(description='Plots electric and magnetic fields and currents from all receiver points in the given output file. Each receiver point is plotted in a new figure window.', usage='cd gprMax; python -m tools.plot_Ascan outputfile')
parser.add_argument('outputfile', help='name of output file including path')
parser.add_argument('--fields', help='list of fields to be plotted, i.e. Ex Ey Ez', default=fieldslist, nargs='+')
parser.add_argument('-fft', action='store_true', default=False, help='plot FFT (single field component must be specified)')
parser.add_argument('--outputs', help='list of outputs to be plotted, i.e. Ex Ey Ez', default=outputslist, nargs='+')
parser.add_argument('-fft', action='store_true', default=False, help='plot FFT (single output must be specified)')
args = parser.parse_args()
# Open output file and read some attributes
@@ -44,28 +45,28 @@ iterations = f.attrs['Iterations']
time = np.arange(0, dt * iterations, dt)
time = time / 1e-9
# Check for valid field names
for field in args.fields:
if field not in fieldslist:
raise CmdInputError('{} not allowed. Options are: Ex Ey Ez Hx Hy Hz'.format(field))
# Check for valid output names
for output in args.outputs:
if output not in outputslist:
raise CmdInputError('{} not allowed. Options are: Ex Ey Ez Hx Hy Hz'.format(output))
# Check for single field component when doing a FFT
# Check for single output component when doing a FFT
if args.fft:
if not len(args.fields) == 1:
raise CmdInputError('A single field component must be specified when using the -fft option')
if not len(args.outputs) == 1:
raise CmdInputError('A single output must be specified when using the -fft option')
# New plot for each receiver
for rx in range(1, nrx + 1):
path = '/rxs/rx' + str(rx) + '/'
# If only a single field is required, create one subplot
if len(args.fields) == 1:
fielddata = f[path + args.fields[0]][:]
# If only a single output is required, create one subplot
if len(args.outputs) == 1:
outputdata = f[path + args.outputs[0]][:]
# Plotting if FFT required
if args.fft:
# Calculate magnitude of frequency spectra of waveform
power = 10 * np.log10(np.abs(np.fft.fft(fielddata))**2)
power = 10 * np.log10(np.abs(np.fft.fft(outputdata))**2)
freqs = np.fft.fftfreq(power.size, d=dt)
# Shift powers so that frequency with maximum power is at zero decibels
@@ -75,11 +76,11 @@ for rx in range(1, nrx + 1):
pltrange = np.where((np.amax(power) - power) > 60)[0][0] + 1
pltrange = np.s_[0:pltrange]
# Plot time history of field component
# Plot time history of output component
fig, (ax1, ax2) = plt.subplots(nrows=1, ncols=2, num='rx' + str(rx), figsize=(20, 10), facecolor='w', edgecolor='w')
line1 = ax1.plot(time, fielddata, 'r', lw=2, label=args.fields[0])
line1 = ax1.plot(time, outputdata, 'r', lw=2, label=args.outputs[0])
ax1.set_xlabel('Time [ns]')
ax1.set_ylabel(args.fields[0] + ' field strength [V/m]')
ax1.set_ylabel(args.outputs[0] + ' field strength [V/m]')
ax1.set_xlim([0, np.amax(time)])
ax1.grid()
@@ -94,10 +95,10 @@ for rx in range(1, nrx + 1):
ax2.grid()
# Change colours and labels for magnetic field components
if 'H' in args.fields[0]:
if 'H' in args.outputs[0]:
plt.setp(line1, color='b')
plt.setp(line2, color='b')
plt.setp(ax1, ylabel=args.fields[0] + ' field strength [A/m]')
plt.setp(ax1, ylabel=args.outputs[0] + ' field strength [A/m]')
plt.setp(stemlines, 'color', 'b')
plt.setp(markerline, 'markerfacecolor', 'b', 'markeredgecolor', 'b')
@@ -105,38 +106,61 @@ for rx in range(1, nrx + 1):
# Plotting if no FFT required
else:
fig, ax = plt.subplots(subplot_kw=dict(xlabel='Time [ns]', ylabel=args.fields[0] + ' field strength [V/m]'), num='rx' + str(rx), figsize=(20, 10), facecolor='w', edgecolor='w')
line = ax.plot(time, fielddata,'r', lw=2, label=args.fields[0])
fig, ax = plt.subplots(subplot_kw=dict(xlabel='Time [ns]', ylabel=args.outputs[0] + ' field strength [V/m]'), num='rx' + str(rx), figsize=(20, 10), facecolor='w', edgecolor='w')
line = ax.plot(time, outputdata,'r', lw=2, label=args.outputs[0])
ax.set_xlim([0, np.amax(time)])
ax.grid()
if 'H' in args.fields[0]:
if 'H' in args.outputs[0]:
plt.setp(line, color='b')
plt.setp(ax, ylabel=args.fields[0] + ' field strength [A/m]')
plt.setp(ax, ylabel=args.outputs[0] + ', field strength [A/m]')
elif 'I' in args.outputs[0]:
plt.setp(line, color='b')
plt.setp(ax, ylabel=args.outputs[0] + ', current [A]')
# If multiple fields required, creat all six subplots and populate only the specified ones
# If multiple fields required, creat all nine subplots and populate only the specified ones
else:
fig, ((ax1, ax2), (ax3, ax4), (ax5, ax6)) = plt.subplots(nrows=3, ncols=2, sharex=False, sharey='col', subplot_kw=dict(xlabel='Time [ns]'), num='rx' + str(rx), figsize=(20, 10), facecolor='w', edgecolor='w')
for field in args.fields:
fielddata = f[path + field][:]
if field == 'Ex':
ax1.plot(time, fielddata,'r', lw=2, label=field)
ax1.set_ylabel(field + ', field strength [V/m]')
elif field == 'Ey':
ax3.plot(time, fielddata,'r', lw=2, label=field)
ax3.set_ylabel(field + ', field strength [V/m]')
elif field == 'Ez':
ax5.plot(time, fielddata,'r', lw=2, label=field)
ax5.set_ylabel(field + ', field strength [V/m]')
elif field == 'Hx':
ax2.plot(time, fielddata,'b', lw=2, label=field)
ax2.set_ylabel(field + ', field strength [A/m]')
elif field == 'Hy':
ax4.plot(time, fielddata,'b', lw=2, label=field)
ax4.set_ylabel(field + ', field strength [A/m]')
elif field == 'Hz':
ax6.plot(time, fielddata,'b', lw=2, label=field)
ax6.set_ylabel(field + ', field strength [A/m]')
fig, ax = plt.subplots(subplot_kw=dict(xlabel='Time [ns]'), num='rx' + str(rx), figsize=(20, 10), facecolor='w', edgecolor='w')
gs = gridspec.GridSpec(3, 3, hspace=0.3)
# fig, ((ax1, ax2), (ax3, ax4), (ax5, ax6)) = plt.subplots(nrows=3, ncols=2, sharex=False, sharey='col', subplot_kw=dict(xlabel='Time [ns]'), num='rx' + str(rx), figsize=(20, 10), facecolor='w', edgecolor='w')
for output in args.outputs:
outputdata = f[path + output][:]
if output == 'Ex':
ax = plt.subplot(gs[0, 0])
ax.plot(time, outputdata,'r', lw=2, label=output)
ax.set_ylabel(output + ', field strength [V/m]')
elif output == 'Ey':
ax = plt.subplot(gs[1, 0])
ax.plot(time, outputdata,'r', lw=2, label=output)
ax.set_ylabel(output + ', field strength [V/m]')
elif output == 'Ez':
ax = plt.subplot(gs[2, 0])
ax.plot(time, outputdata,'r', lw=2, label=output)
ax.set_ylabel(output + ', field strength [V/m]')
elif output == 'Hx':
ax = plt.subplot(gs[0, 1])
ax.plot(time, outputdata,'b', lw=2, label=output)
ax.set_ylabel(output + ', field strength [A/m]')
elif output == 'Hy':
ax = plt.subplot(gs[1, 1])
ax.plot(time, outputdata,'b', lw=2, label=output)
ax.set_ylabel(output + ', field strength [A/m]')
elif output == 'Hz':
ax = plt.subplot(gs[2, 1])
ax.plot(time, outputdata,'b', lw=2, label=output)
ax.set_ylabel(output + ', field strength [A/m]')
elif output == 'Ix':
ax = plt.subplot(gs[0, 2])
ax.plot(time, outputdata,'b', lw=2, label=output)
ax.set_ylabel(output + ', current [A]')
elif output == 'Iy':
ax = plt.subplot(gs[1, 2])
ax.plot(time, outputdata,'b', lw=2, label=output)
ax.set_ylabel(output + ', current [A]')
elif output == 'Iz':
ax = plt.subplot(gs[2, 2])
ax.plot(time, outputdata,'b', lw=2, label=output)
ax.set_ylabel(output + ', current [A]')
for ax in fig.axes:
ax.set_xlim([0, np.amax(time)])
ax.grid()

查看文件

@@ -25,39 +25,41 @@ from gprMax.exceptions import CmdInputError
"""Plots a B-scan image."""
# Fields that can be plotted
fieldslist = ['Ex', 'Hx', 'Ey', 'Hy', 'Ez', 'Hz']
# Outputs that can be plotted
outputslist = ['Ex', 'Ey', 'Ez', 'Hx', 'Hy', 'Hz', 'Ix', 'Iy', 'Iz']
# Parse command line arguments
parser = argparse.ArgumentParser(description='Plots B-scan.', usage='cd gprMax; python -m tools.plot_Bscan outputfile --field fieldcomponent')
parser.add_argument('outputfile', help='name of output file including path')
parser.add_argument('--field', help='name of field to be plotted, i.e. Ex Ey Ez')
parser.add_argument('--output', help='name of output to be plotted, i.e. Ex Ey Ez')
args = parser.parse_args()
# Check for valid field name
if args.field not in fieldslist:
raise CmdInputError('{} not allowed. Options are: Ex Ey Ez Hx Hy Hz'.format(args.field))
# Check for valid output name
if args.output not in outputslist:
raise CmdInputError('{} not allowed. Options are: Ex Ey Ez Hx Hy Hz Ix Iy Iz'.format(args.output))
# Open output file and read some attributes
f = h5py.File(args.outputfile, 'r')
path = '/rxs/rx1'
data = f[path + '/' + args.field]
outputdata = f[path + '/' + args.output]
# Check that there is more than one A-scan present
if data.shape[1] == 1:
if outputdata.shape[1] == 1:
raise CmdInputError('{} contains only a single A-scan.'.format(args.outputfile))
# Plot B-scan image
fig = plt.figure(num=args.outputfile, figsize=(20, 10), facecolor='w', edgecolor='w')
plt.imshow(data, extent=[0, data.shape[1], data.shape[0]*f.attrs['dt']*1e9, 0], interpolation='nearest', aspect='auto', cmap='seismic', vmin=-np.amax(np.abs(data)), vmax=np.amax(np.abs(data)))
plt.imshow(outputdata, extent=[0, outputdata.shape[1], outputdata.shape[0]*f.attrs['dt']*1e9, 0], interpolation='nearest', aspect='auto', cmap='seismic', vmin=-np.amax(np.abs(outputdata)), vmax=np.amax(np.abs(outputdata)))
plt.xlabel('Trace number')
plt.ylabel('Time [ns]')
plt.grid()
cb = plt.colorbar()
if 'E' in args.field:
if 'E' in args.output:
cb.set_label('Field strength [V/m]')
elif 'H' in args.field:
elif 'H' in args.output:
cb.set_label('Field strength [A/m]')
elif 'I' in args.output:
cb.set_label('Current [A]')
plt.show()
#fig.savefig(os.path.splitext(os.path.abspath(file))[0] + '.pdf', dpi=None, format='pdf', bbox_inches='tight', pad_inches=0.1)