文件
gprMax/testing/test_experimental.py
2023-03-10 10:52:05 -07:00

104 行
3.6 KiB
Python

# Copyright (C) 2015-2023: The University of Edinburgh, United Kingdom
# Authors: Craig Warren, Antonis Giannopoulos, and John Hartley
#
# This file is part of gprMax.
#
# gprMax is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# gprMax is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with gprMax. If not, see <http://www.gnu.org/licenses/>.
import argparse
import logging
from pathlib import Path
import h5py
import matplotlib.pyplot as plt
import numpy as np
logger = logging.getLogger(__name__)
"""Plots a comparison of fields between given simulation output and experimental
data files.
"""
# Parse command line arguments
parser = argparse.ArgumentParser(description='Plots a comparison of fields between ' +
'given simulation output and experimental data files.',
usage='cd gprMax; python -m testing.test_experimental modelfile realfile output')
parser.add_argument('modelfile', help='name of model output file including path')
parser.add_argument('realfile', help='name of file containing experimental data including path')
parser.add_argument('output', help='output to be plotted, i.e. Ex Ey Ez', nargs='+')
args = parser.parse_args()
modelfile = Path(args.modelfile)
realfile = Path(args.realfile)
# Model results
f = h5py.File(Path(modelfile), 'r')
path = '/rxs/rx1/'
availablecomponents = list(f[path].keys())
# Check for polarity of output and if requested output is in file
if args.output[0][0] == 'm':
polarity = -1
args.outputs[0] = args.output[0][1:]
else:
polarity = 1
if args.output[0] not in availablecomponents:
logger.exception(f"{args.output[0]} output requested to plot, but the " +
f"available output for receiver 1 is {', '.join(availablecomponents)}")
raise ValueError
floattype = f[path + args.output[0]].dtype
iterations = f.attrs['Iterations']
dt = f.attrs['dt']
model = np.zeros(iterations, dtype=floattype)
model = f[path + args.output[0]][:] * polarity
model /= np.amax(np.abs(model))
timemodel = np.linspace(0, 1, iterations)
timemodel *= (iterations * dt)
f.close()
# Find location of maximum value from model
modelmax = np.where(np.abs(model) == 1)[0][0]
# Real results
with open(realfile, 'r') as f:
real = np.loadtxt(f)
real[:, 1] = real[:, 1] / np.amax(np.abs(real[:, 1]))
realmax = np.where(np.abs(real[:, 1]) == 1)[0][0]
difftime = - (timemodel[modelmax] - real[realmax, 0])
# Plot modelled and real data
fig, ax = plt.subplots(num=modelfile.stem + '_vs_' + realfile.stem,
figsize=(20, 10), facecolor='w', edgecolor='w')
ax.plot(timemodel + difftime, model, 'r', lw=2, label='Model')
ax.plot(real[:, 0], real[:, 1], 'r', ls='--', lw=2, label='Experiment')
ax.set_xlabel('Time [s]')
ax.set_ylabel('Amplitude')
ax.set_xlim([0, timemodel[-1]])
# ax.set_ylim([-1, 1])
ax.legend()
ax.grid()
# Save a PDF/PNG of the figure
savename = modelfile.stem + '_vs_' + realfile.stem
savename = modelfile.parent / savename
# fig.savefig(savename.with_suffix('.pdf'), dpi=None, format='pdf',
# bbox_inches='tight', pad_inches=0.1)
# fig.savefig(savename.with_suffix('.png'), dpi=150, format='png',
# bbox_inches='tight', pad_inches=0.1)
plt.show()