文件
gprMax/gprMax/cython/geometry_outputs.pyx
2024-01-04 10:38:46 +00:00

112 行
3.3 KiB
Cython

# Copyright (C) 2015-2024: The University of Edinburgh, United Kingdom
# Authors: Craig Warren, Antonis Giannopoulos, and John Hartley
#
# This file is part of gprMax.
#
# gprMax is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# gprMax is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with gprMax. If not, see <http://www.gnu.org/licenses/>.
import numpy as np
cimport numpy as np
cpdef write_lines(
float xs,
float ys,
float zs,
int nx,
int ny,
int nz,
float dx,
float dy,
float dz,
np.uint32_t[:, :, :, :] ID
):
"""Generates arrays with to be written as lines (cell edges) to a VTK file.
Args:
xs, ys, zs: float for starting coordinates of geometry view in metres.
nx, ny, nz: int for size of the volume in cells.
dx, dy, dz: float for spatial discretisation of geometry view in metres.
ID: memoryview of sampled ID array according to geometry view spatial
discretisation.
Returns:
x, y, z: 1D nparrays with coordinates of the vertex of the lines.
lines: nparray of material IDs for each line (cell edge) required.
"""
cdef Py_ssize_t i, j, k
cdef Py_ssize_t lc = 0 # Line counter
cdef Py_ssize_t pc = 0 # Point counter
cdef Py_ssize_t n_x_lines = 0
cdef Py_ssize_t n_y_lines = 0
cdef Py_ssize_t n_z_lines = 0
cdef Py_ssize_t n_lines = 0
cdef Py_ssize_t n_points = 0
n_x_lines = nx * (ny + 1) * (nz + 1)
n_y_lines = ny * (nx + 1) * (nz + 1)
n_z_lines = nz * (nx + 1) * (ny + 1)
n_lines = n_x_lines + n_y_lines + n_z_lines
n_points = 2 * n_lines # A line is defined by 2 points
x = np.zeros(n_points)
y = np.zeros(n_points)
z = np.zeros(n_points)
lines = np.zeros(n_lines)
for i in range(nx):
for j in range(ny):
for k in range(nz):
# x-direction cell edge
# Material ID of line
lines[lc] = ID[0][i, j, k]
# Set the starting point position of the edge
x[pc], y[pc], z[pc] = i, j, k
# Next point
pc += 1
# Set the end point position of the edge
x[pc], y[pc], z[pc] = (i + 1), j, k
# Next point
pc += 1
# Next line
lc += 1
# y-direction cell edge
lines[lc] = ID[1, i, j, k]
x[pc], y[pc], z[pc] = i, j, k
pc += 1
x[pc], y[pc], z[pc] = i, (j + 1), k
pc += 1
lc += 1
# z-direction cell edge
lines[lc] = ID[2, i, j, k]
x[pc], y[pc], z[pc] = i, j, k
pc += 1
x[pc], y[pc], z[pc] = i, j, (k + 1)
pc += 1
lc += 1
x *= dx
y *= dy
z *= dz
x += xs
y += ys
z += zs
return x, y, z, lines