# Copyright (C) 2015-2024: The University of Edinburgh, United Kingdom # Authors: Craig Warren, Antonis Giannopoulos, and John Hartley # # This file is part of gprMax. # # gprMax is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # gprMax is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with gprMax. If not, see . import argparse import logging from pathlib import Path import h5py import matplotlib.pyplot as plt import numpy as np logger = logging.getLogger(__name__) """Plots a comparison of fields between given simulation output and experimental data files. """ # Parse command line arguments parser = argparse.ArgumentParser( description="Plots a comparison of fields between " + "given simulation output and experimental data files.", usage="cd gprMax; python -m testing.test_experimental modelfile realfile output", ) parser.add_argument("modelfile", help="name of model output file including path") parser.add_argument("realfile", help="name of file containing experimental data including path") parser.add_argument("output", help="output to be plotted, i.e. Ex Ey Ez", nargs="+") args = parser.parse_args() modelfile = Path(args.modelfile) realfile = Path(args.realfile) # Model results f = h5py.File(Path(modelfile), "r") path = "/rxs/rx1/" availablecomponents = list(f[path].keys()) # Check for polarity of output and if requested output is in file if args.output[0][0] == "m": polarity = -1 args.outputs[0] = args.output[0][1:] else: polarity = 1 if args.output[0] not in availablecomponents: logger.exception( f"{args.output[0]} output requested to plot, but the " + f"available output for receiver 1 is {', '.join(availablecomponents)}" ) raise ValueError floattype = f[path + args.output[0]].dtype iterations = f.attrs["Iterations"] dt = f.attrs["dt"] model = np.zeros(iterations, dtype=floattype) model = f[path + args.output[0]][:] * polarity model /= np.amax(np.abs(model)) timemodel = np.linspace(0, 1, iterations) timemodel *= iterations * dt f.close() # Find location of maximum value from model modelmax = np.where(np.abs(model) == 1)[0][0] # Real results with open(realfile, "r") as f: real = np.loadtxt(f) real[:, 1] = real[:, 1] / np.amax(np.abs(real[:, 1])) realmax = np.where(np.abs(real[:, 1]) == 1)[0][0] difftime = -(timemodel[modelmax] - real[realmax, 0]) # Plot modelled and real data fig, ax = plt.subplots( num=f"{modelfile.stem}_vs_{realfile.stem}", figsize=(20, 10), facecolor="w", edgecolor="w", ) ax.plot(timemodel + difftime, model, "r", lw=2, label="Model") ax.plot(real[:, 0], real[:, 1], "r", ls="--", lw=2, label="Experiment") ax.set_xlabel("Time [s]") ax.set_ylabel("Amplitude") ax.set_xlim([0, timemodel[-1]]) # ax.set_ylim([-1, 1]) ax.legend() ax.grid() # Save a PDF/PNG of the figure savename = f"{modelfile.stem}_vs_{realfile.stem}" savename = modelfile.parent / savename # fig.savefig(savename.with_suffix('.pdf'), dpi=None, format='pdf', # bbox_inches='tight', pad_inches=0.1) # fig.savefig(savename.with_suffix('.png'), dpi=150, format='png', # bbox_inches='tight', pad_inches=0.1) plt.show()