diff --git a/tests/test_compare_experimental.py b/tests/test_compare_experimental.py index dd89b157..f40f5f37 100644 --- a/tests/test_compare_experimental.py +++ b/tests/test_compare_experimental.py @@ -16,43 +16,45 @@ # You should have received a copy of the GNU General Public License # along with gprMax. If not, see . -import sys, os +import sys, os, argparse import h5py import numpy as np import matplotlib as mpl import matplotlib.pyplot as plt -"""Compare field outputs - -Usage: - cd gprMax - python -m tests.test_compare_experimental path_to_model_output path_to_real_output - -""" +from gprMax.exceptions import CmdInputError -modelfile = sys.argv[1] -realfile = sys.argv[2] -path = '/rxs/rx1/' -# Key refers to subplot location -fields = {0: 'Ex', 1: 'Ey', 2: 'Ez', 3: 'Hx', 4: 'Hy', 5: 'Hz'} -plotorder = list(fields.keys()) +"""Plots a comparison of fields between given simulation output and experimental data files.""" + +# Parse command line arguments +parser = argparse.ArgumentParser(description='Plots a comparison of fields between given simulation output and experimental data files.', usage='cd gprMax; python -m tests.test_compare_experimental modelfile realfile output') +parser.add_argument('modelfile', help='name of model output file including path') +parser.add_argument('realfile', help='name of file containing experimental data including path') +parser.add_argument('output', help='output to be plotted, i.e. Ex Ey Ez', nargs='+') +args = parser.parse_args() # Model results -f = h5py.File(modelfile, 'r') -floattype = f[path + 'Ex'].dtype -model = np.zeros((f.attrs['Iterations'], 6), dtype=floattype) +f = h5py.File(args.modelfile, 'r') +path = '/rxs/rx1/' +availablecomponents = list(f[path].keys()) + +# Check if requested output is in file +if args.output[0] not in availablecomponents: + raise CmdInputError('{} output requested to plot, but the available output for receiver 1 is {}'.format(args.output[0], ', '.join(availablecomponents))) + +floattype = f[path + args.output[0]].dtype +model = np.zeros((f.attrs['Iterations']), dtype=floattype) timemodel = np.zeros((f.attrs['Iterations']), dtype=floattype) timemodel = np.arange(0, f.attrs['dt'] * f.attrs['Iterations'], f.attrs['dt']) / 1e-9 -for ID, name in fields.items(): - model[:,ID] = f[path + str(name)][:] * -1 - model[:,ID] = model[:,ID] / np.amax(np.abs(model[:,ID])) +model = f[path + args.output[0]][:] * -1 +model /= np.amax(np.abs(model)) f.close() # Select model field of interest and find max -modelmax = np.where(np.abs(model[:,1]) == 1)[0][0] +modelmax = np.where(np.abs(model) == 1)[0][0] # Real results -with open(realfile, 'r') as f: +with open(args.realfile, 'r') as f: real = np.loadtxt(f) real[:,1] = real[:,1] / np.amax(np.abs(real[:,1])) realmax = np.where(np.abs(real[:,1]) == 1)[0][0] @@ -60,18 +62,17 @@ realmax = np.where(np.abs(real[:,1]) == 1)[0][0] difftime = - (timemodel[modelmax] - real[realmax,0]) # Plot modelled and real data -fig, ax = plt.subplots(num=modelfile + ' versus ' + realfile, figsize=(20, 10), facecolor='w', edgecolor='w') -ax.plot(timemodel + difftime, model[:,1], 'r', lw=2, label='Model') +fig, ax = plt.subplots(num=args.modelfile + ' versus ' + args.realfile, figsize=(20, 10), facecolor='w', edgecolor='w') +ax.plot(timemodel + difftime, model, 'r', lw=2, label='Model') ax.plot(real[:,0], real[:,1], 'r', ls='--', lw=2, label='Experiment') ax.set_xlabel('Time [ns]') ax.set_ylabel('Amplitude') ax.set_xlim([0, timemodel[-1]]) ax.set_ylim([-1, 1]) ax.legend() -[label.set_bbox(dict(facecolor='white', edgecolor='None', alpha=0.65 )) for label in ax.get_xticklabels() + ax.get_yticklabels()] ax.grid() # Show/print plots -savename = os.path.abspath(os.path.dirname(modelfile)) + os.sep + os.path.splitext(os.path.split(modelfile)[1])[0] + '_vs_' + os.path.splitext(os.path.split(realfile)[1])[0] +savename = os.path.abspath(os.path.dirname(args.modelfile)) + os.sep + os.path.splitext(os.path.split(args.modelfile)[1])[0] + '_vs_' + os.path.splitext(os.path.split(args.realfile)[1])[0] #fig.savefig(savename + '.pdf', dpi=None, format='pdf', bbox_inches='tight', pad_inches=0.1) plt.show() \ No newline at end of file