Added docs to master branch.

docs/source/models/GSSI_1500_cylinder_Bscan.in

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+#title: B-scan from a metal cylinder buried in a dielectric half-space with a GSSI 1.5GHz 'like' antenna
+#domain: 0.480 0.148 0.235
+#dx_dy_dz: 0.001 0.001 0.001
+#time_window: 6e-9
+
+#material: 6 0 1 0 half_space
+
+#box: 0 0 0 0.480 0.148 0.170 half_space
+#cylinder: 0.240 0 0.080 0.240 0.148 0.080 0.010 pec
+
+#python:
+from user_libs.antennas import antenna_like_GSSI_1500
+antenna_like_GSSI_1500(0.105 + current_model_run * 0.005, 0.074, 0.170, 0.001)
+#end_python:
+
+geometry_view: 0 0 0 0.480 0.148 0.235 0.001 0.001 0.001 GSSI_1500_cylinder n

docs/source/models/antenna_MALA_1200_fs.in

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+#title: MALA 1.2GHz 'like' antenna in free-space
+#domain: 0.264 0.189 0.220
+#dx_dy_dz: 0.001 0.001 0.001
+#time_window: 6e-9
+
+#python:
+from user_libs.antennas import antenna_like_MALA_1200
+antenna_like_MALA_1200(0.132, 0.095, 0.100, 0.001)
+#end_python:

docs/source/models/cylinder_Ascan_2D.in

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+#title: A-scan from a metal cylinder buried in a dielectric half-space
+#domain: 0.240 0.190 0.001
+#dx_dy_dz: 0.001 0.001 0.001
+#time_window: 4e-9
+#time_step_limit_type: 2D
+#pml_cells: 10 10 0 10 10 0
+
+#material: 6 0 1 0 half_space
+
+#waveform: ricker 1 1.5e9 my_ricker
+#hertzian_dipole: z 0.100 0.170 0 my_ricker
+#rx: 0.140 0.170 0
+
+#box: 0 0 0 0.240 0.170 0.001 half_space
+#cylinder: 0.120 0.080 0 0.120 0.080 0.001 0.010 pec
+
+#geometry_view: 0 0 0 0.240 0.190 0.001 0.001 0.001 0.001 cylinder_half_space n

docs/source/models/cylinder_Bscan_2D.in

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+#title: B-scan from a metal cylinder buried in a dielectric half-space
+#domain: 0.240 0.190 0.001
+#dx_dy_dz: 0.001 0.001 0.001
+#time_window: 4e-9
+#time_step_limit_type: 2D
+#pml_cells: 10 10 0 10 10 0
+
+#material: 6 0 1 0 half_space
+
+#waveform: ricker 1 1.5e9 my_ricker
+#hertzian_dipole: z 0.020 0.170 0 my_ricker
+#rx: 0.060 0.170 0
+#src_steps: 0.002 0 0
+#rx_steps: 0.002 0 0
+
+#box: 0 0 0 0.240 0.170 0.001 half_space
+#cylinder: 0.120 0.080 0 0.120 0.080 0.001 0.010 pec

docs/source/models/heterogeneous_soil.in

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+#title: Heterogeneous soil using a stochastic distribution of dielectric properties given by a mixing model from Peplinski
+#domain: 0.15 0.15 0.1
+#dx_dy_dz: 0.001 0.001 0.001
+#time_window: 6e-9
+
+#waveform: ricker 1 1.5e9 my_ricker
+#hertzian_dipole: y 0.045 0.075 0.085 my_ricker
+#rx: 0.105 0.075 0.085
+
+#soil_peplinski: 0.5 0.5 2.0 2.66 0.001 0.25 my_soil
+#fractal_box: 0 0 0 0.15 0.15 0.070 1.5 1 1 1 50 my_soil my_soil_box
+#add_surface_roughness: 0 0 0.070 0.15 0.15 0.070 1.5 1 1 0.065 0.080 my_soil_box
+
+#geometry_view: 0 0 0 0.15 0.15 0.1 0.001 0.001 0.001 heterogeneous_soil n