Ran pre-commit run --all-files to modify all the files correctly.

examples/antenna_like_GSSI_400_fs.py

@@ -44,10 +44,7 @@ for obj in gssi_objects:
     scene.add(obj)
 
 gv1 = gprMax.GeometryView(
-    p1=(0, 0, 0), 
-    p2=(x, y, z), 
-    dl=(dl, dl, dl), 
-    filename="antenna_like_GSSI_400", output_type="n"
+    p1=(0, 0, 0), p2=(x, y, z), dl=(dl, dl, dl), filename="antenna_like_GSSI_400", output_type="n"
 )
 gv2 = gprMax.GeometryView(
     p1=(ant_pos[0] - 0.150, ant_pos[1] - 0.150, ant_pos[2]),

gprMax/gprMax.py

@@ -47,8 +47,7 @@ help_msg = {
     "scenes": "(list, req): Scenes to run the model. Multiple scene objects "
     "can given in order to run multiple simulation runs. Each scene "
     "must contain the essential simulation objects",
-    "inputfile": "(str, opt): Input file path. Can also run simulation by "
-                 "providing an input file.",
+    "inputfile": "(str, opt): Input file path. Can also run simulation by " "providing an input file.",
     "outputfile": "(str, req): File path to the output data file.",
     "n": "(int, req): Number of required simulation runs.",
     "i": "(int, opt): Model number to start/restart simulation from. It would "
@@ -60,20 +59,16 @@ help_msg = {
     "models to be farmed out using a MPI task farm, e.g. to create a "
     "B-scan with 60 traces and use MPI to farm out each trace. For "
     "further details see the performance section of the User Guide.",
-    "gpu": "(list/bool, opt): Flag to use NVIDIA GPU or list of NVIDIA GPU "
-           "device ID(s) for specific GPU card(s).",
-    "opencl": "(list/bool, opt): Flag to use OpenCL or list of OpenCL device "
-              "ID(s) for specific compute device(s).",
+    "gpu": "(list/bool, opt): Flag to use NVIDIA GPU or list of NVIDIA GPU " "device ID(s) for specific GPU card(s).",
+    "opencl": "(list/bool, opt): Flag to use OpenCL or list of OpenCL device " "ID(s) for specific compute device(s).",
     "subgrid": "(bool, opt): Flag to use sub-gridding.",
     "autotranslate": "(bool, opt): For sub-gridding - auto translate objects "
     "with main grid coordinates to their equivalent local "
     "grid coordinate within the subgrid. If this option is "
     "off users must specify sub-grid object point within the "
     "global subgrid space.",
-    "geometry_only": "(bool, opt): Build a model and produce any geometry "
-                     "views but do not run the simulation.",
-    "geometry_fixed": "(bool, opt): Run a series of models where the geometry "
-                      "does not change between models.",
+    "geometry_only": "(bool, opt): Build a model and produce any geometry " "views but do not run the simulation.",
+    "geometry_fixed": "(bool, opt): Run a series of models where the geometry " "does not change between models.",
     "write_processed": "(bool, opt): Writes another input file after any "
     "Python code (#python blocks) and in the original input "
     "file has been processed.",

gprMax/hash_cmds_multiuse.py

@@ -19,6 +19,7 @@
 import logging
 
 from .cmds_multiuse import (
+    PMLCFS,
     AddDebyeDispersion,
     AddDrudeDispersion,
     AddLorentzDispersion,
@@ -29,7 +30,6 @@ from .cmds_multiuse import (
     Material,
     MaterialList,
     MaterialRange,
-    PMLCFS,
     Rx,
     RxArray,
     Snapshot,
@@ -387,7 +387,7 @@ def process_multicmds(multicmds):
             material_list = MaterialList(list_of_materials=lmats, id=tmp[tokens - 1])
             scene_objects.append(material_list)
 
-    cmdname = '#pml_cfs'
+    cmdname = "#pml_cfs"
     if multicmds[cmdname] is not None:
         for cmdinstance in multicmds[cmdname]:
             tmp = cmdinstance.split()
@@ -396,7 +396,8 @@ def process_multicmds(multicmds):
                 logger.exception("'" + cmdname + ": " + " ".join(tmp) + "'" + " requires exactly twelve parameters")
                 raise ValueError
 
-            pml_cfs = PMLCFS(alphascalingprofile=tmp[0],
+            pml_cfs = PMLCFS(
+                alphascalingprofile=tmp[0],
                 alphascalingdirection=tmp[1],
                 alphamin=tmp[2],
                 alphamax=tmp[3],
@@ -407,7 +408,8 @@ def process_multicmds(multicmds):
                 sigmascalingprofile=tmp[8],
                 sigmascalingdirection=tmp[9],
                 sigmamin=tmp[10],
-                             sigmamax=tmp[11])
+                sigmamax=tmp[11],
+            )
 
             scene_objects.append(pml_cfs)
 

gprMax/hash_cmds_singleuse.py

@@ -136,14 +136,18 @@ def process_singlecmds(singlecmds):
             logger.exception(f"{cmd} requires either one or six parameter(s)")
             raise ValueError
 
-        if 'pml_formulation' in locals():
+        if "pml_formulation" in locals():
             if len(tmp) == 1:
                 pml_props = PMLProps(formulation=pml_formulation, thickness=int(tmp[0]))
             else:
                 pml_props = PMLProps(
                     formulation=pml_formulation,
-                    x0=int(tmp[0]), y0=int(tmp[1]), z0=int(tmp[2]), 
-                    xmax=int(tmp[3]), ymax=int(tmp[4]), zmax=int(tmp[5])
+                    x0=int(tmp[0]),
+                    y0=int(tmp[1]),
+                    z0=int(tmp[2]),
+                    xmax=int(tmp[3]),
+                    ymax=int(tmp[4]),
+                    zmax=int(tmp[5]),
                 )
         else:
             if len(tmp) == 1:

testing/diff_output_files.py

@@ -24,6 +24,7 @@ import numpy as np
 
 logger = logging.getLogger(__name__)
 
+
 def diff_output_files(filename1, filename2):
     """Calculates differences between two output files.
 

testing/models_pmls/pml_3D_pec_plate/plot_pml_comparison.py

@@ -50,8 +50,9 @@ fig, ax = plt.subplots(
 )
 
 for x, model in enumerate(testmodels):
-    time, datadiffs = diff_output_files(fn.parent.joinpath(basename + "_ref.h5"), 
-                                        fn.parent.joinpath(basename + str(x + 1) + ".h5"))
+    time, datadiffs = diff_output_files(
+        fn.parent.joinpath(basename + "_ref.h5"), fn.parent.joinpath(basename + str(x + 1) + ".h5")
+    )
 
     # Print maximum error value
     start = 210

testing/models_pmls/pml_basic/plot_pml_comparison.py

@@ -74,9 +74,7 @@ for x, PMLID in enumerate(PMLIDs):
         ax.set_ylabel(f"{output} error [dB]")
 
     # Save a PDF/PNG of the figure
-    fig.savefig(basename + "_diffs_" + PMLID + ".pdf", dpi=None, format='pdf', bbox_inches='tight', pad_inches=0.1)
+    fig.savefig(basename + "_diffs_" + PMLID + ".pdf", dpi=None, format="pdf", bbox_inches="tight", pad_inches=0.1)
     # fig.savefig(basename + "_diffs_" + PMLID + ".png", dpi=150, format='png', bbox_inches='tight', pad_inches=0.1)
 
 plt.show()
-
-