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Overhaul of tests sub-package.

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Craig Warren
2017-01-26 15:19:24 +00:00
父节点 6d4caca5aa
当前提交 1cb71fdb2c
共有 96 个文件被更改，包括 308 次插入 和 265 次删除
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tests/test_models_basic.py 普通文件
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# Copyright (C) 2015-2017: The University of Edinburgh
# Authors: Craig Warren and Antonis Giannopoulos
#
# This file is part of gprMax.
#
# gprMax is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# gprMax is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with gprMax. If not, see <http://www.gnu.org/licenses/>.
import datetime
import os
import sys
from time import perf_counter
from colorama import init, Fore, Style
init()
import h5py
import numpy as np
np.seterr(invalid='raise')
import matplotlib.pyplot as plt
if sys.platform == 'linux':
plt.switch_backend('agg')
from gprMax.gprMax import api
from gprMax.exceptions import GeneralError
from tests.analytical_solutions import hertzian_dipole_fs
"""Compare field outputs
Usage:
cd gprMax
python -m tests.test_basic_suite
"""
basepath = os.path.join(os.path.dirname(os.path.abspath(__file__)), 'models_basic')
# List of available test models
testmodels = ['hertzian_dipole_fs_analytical', '2D_ExHyHz', '2D_EyHxHz', '2D_EzHxHy', 'cylinder_Ascan_2D', 'hertzian_dipole_fs', 'hertzian_dipole_hs', 'hertzian_dipole_dispersive']
# Select a specific model if desired
#testmodels = [testmodels[0], testmodels[1], testmodels[2], testmodels[3], testmodels[4], testmodels[5]]
#testmodels = [testmodels[5]]
testresults = dict.fromkeys(testmodels)
path = '/rxs/rx1/'
starttime = perf_counter()
for i, model in enumerate(testmodels):
testresults[model] = {}
# Run model
api(os.path.join(basepath, model + os.path.sep + model + '.in'))
# Special case for analytical comparison
if model == 'hertzian_dipole_fs_analytical':
# Get output for model file
filetest = h5py.File(os.path.join(basepath, model + os.path.sep + model + '.out'),'r')
testresults[model]['Test version'] = filetest.attrs['gprMax']
# Get available field output component names
outputstest = list(filetest[path].keys())
# Arrays for storing time
floattype = filetest[path + outputstest[0]].dtype
timetest = np.zeros((filetest.attrs['Iterations']), dtype=floattype)
timetest = np.arange(0, filetest.attrs['dt'] * filetest.attrs['Iterations'], filetest.attrs['dt']) / 1e-9
timeref = timetest
# Arrays for storing field data
datatest = np.zeros((filetest.attrs['Iterations'], len(outputstest)), dtype=floattype)
print(datatest.shape)
for ID, name in enumerate(outputstest):
datatest[:,ID] = filetest[path + str(name)][:]
# Tx/Rx position to feed to analytical solution
rxpos = filetest[path].attrs['Position']
txpos = filetest['/srcs/src1/'].attrs['Position']
rxposrelative = ((rxpos[0] - txpos[0]), (rxpos[1] - txpos[1]), (rxpos[2] - txpos[2]))
# Analytical solution of a dipole in free space
dataref = hertzian_dipole_fs(filetest.attrs['Iterations'], filetest.attrs['dt'], filetest.attrs['dx, dy, dz'], rxposrelative)
filetest.close()
# Diffs
datadiffs = np.zeros(datatest.shape, dtype=floattype)
for i in range(len(outputstest)):
max = np.amax(np.abs(dataref[:,i]))
try:
datadiffs[:,i] = ((np.abs(dataref[:,i] - datatest[:,i])) / max) * 100
except FloatingPointError:
print('FloatingPointError')
datadiffs[:,i] = 0
# Register test passed
threshold = 2 # Percent
if np.amax(np.amax(datadiffs)) < 2:
testresults[model]['Pass'] = True
else:
testresults[model]['Pass'] = False
testresults[model]['Max diff'] = np.amax(np.amax(datadiffs))
else:
# Get output for model and reference files
fileref = h5py.File(os.path.join(basepath, model + os.path.sep + model + '_ref.out'),'r')
filetest = h5py.File(os.path.join(basepath, model + os.path.sep + model + '.out'),'r')
testresults[model]['Ref version'] = fileref.attrs['gprMax']
testresults[model]['Test version'] = filetest.attrs['gprMax']
# Get available field output component names
outputsref = list(fileref[path].keys())
outputstest = list(filetest[path].keys())
if outputsref != outputstest:
raise GeneralError('Field output components do not match reference solution')
# Check that type of float used to store fields matches
if filetest[path + outputstest[0]].dtype != fileref[path + outputsref[0]].dtype:
raise GeneralError('Type of floating point number does not match reference solution')
else:
floattype = fileref[path + outputsref[0]].dtype
# Array for storing time
timeref = np.zeros((fileref.attrs['Iterations']), dtype=floattype)
timeref = np.arange(0, fileref.attrs['dt'] * fileref.attrs['Iterations'], fileref.attrs['dt']) / 1e-9
timetest = np.zeros((filetest.attrs['Iterations']), dtype=floattype)
timetest = np.arange(0, filetest.attrs['dt'] * filetest.attrs['Iterations'], filetest.attrs['dt']) / 1e-9
# Get available field output component names
outputsref = list(fileref[path].keys())
outputstest = list(filetest[path].keys())
if outputsref != outputstest:
raise GeneralError('Field output components do not match reference solution')
# Arrays for storing field data
dataref = np.zeros((fileref.attrs['Iterations'], len(outputsref)), dtype=floattype)
datatest = np.zeros((filetest.attrs['Iterations'], len(outputstest)), dtype=floattype)
for ID, name in enumerate(outputsref):
dataref[:,ID] = fileref[path + str(name)][:]
datatest[:,ID] = filetest[path + str(name)][:]
fileref.close()
filetest.close()
# Diffs
datadiffs = np.zeros(datatest.shape, dtype=floattype)
for i in range(len(outputstest)):
max = np.nanmax(np.abs(dataref[:,i]))
try:
datadiffs[:,i] = ((np.abs(dataref[:,i] - datatest[:,i])) / max) * 100
except FloatingPointError:
print('FloatingPointError')
datadiffs[:,i] = 0
# Register test passed
if not np.any(datadiffs):
testresults[model]['Pass'] = True
else:
testresults[model]['Pass'] = False
testresults[model]['Max diff'] = np.amax(np.amax(datadiffs))
# Plot datasets
fig1, ((ex1, hx1), (ey1, hy1), (ez1, hz1)) = plt.subplots(nrows=3, ncols=2, sharex=False, sharey='col', subplot_kw=dict(xlabel='Time [ns]'), num=model + '.in', figsize=(20, 10), facecolor='w', edgecolor='w')
ex1.plot(timetest, datatest[:,0],'r', lw=2, label=model)
ex1.plot(timeref, dataref[:,0],'g', lw=2, ls='--', label=model + '(Ref)')
ey1.plot(timetest, datatest[:,1],'r', lw=2, label=model)
ey1.plot(timeref, dataref[:,1],'g', lw=2, ls='--', label=model + '(Ref)')
ez1.plot(timetest, datatest[:,2],'r', lw=2, label=model)
ez1.plot(timeref, dataref[:,2],'g', lw=2, ls='--', label=model + '(Ref)')
hx1.plot(timetest, datatest[:,3],'r', lw=2, label=model)
hx1.plot(timeref, dataref[:,3],'g', lw=2, ls='--', label=model + '(Ref)')
hy1.plot(timetest, datatest[:,4],'r', lw=2, label=model)
hy1.plot(timeref, dataref[:,4],'g', lw=2, ls='--', label=model + '(Ref)')
hz1.plot(timetest, datatest[:,5],'r', lw=2, label=model)
hz1.plot(timeref, dataref[:,5],'g', lw=2, ls='--', label=model + '(Ref)')
ylabels = ['$E_x$, field strength [V/m]', '$H_x$, field strength [A/m]', '$E_y$, field strength [V/m]', '$H_y$, field strength [A/m]', '$E_z$, field strength [V/m]', '$H_z$, field strength [A/m]']
for i, ax in enumerate(fig1.axes):
ax.set_ylabel(ylabels[i])
ax.set_xlim(0, np.amax(timetest))
ax.grid()
ax.legend()
# Plot diffs
fig2, ((ex2, hx2), (ey2, hy2), (ez2, hz2)) = plt.subplots(nrows=3, ncols=2, sharex=False, sharey='col', subplot_kw=dict(xlabel='Time [ns]'), num='Diffs: ' + model + '.in', figsize=(20, 10), facecolor='w', edgecolor='w')
ex2.plot(timeref, datadiffs[:,0],'r', lw=2, label='Ex')
ey2.plot(timeref, datadiffs[:,1],'r', lw=2, label='Ey')
ez2.plot(timeref, datadiffs[:,2],'r', lw=2, label='Ez')
hx2.plot(timeref, datadiffs[:,3],'r', lw=2, label='Hx')
hy2.plot(timeref, datadiffs[:,4],'r', lw=2, label='Hy')
hz2.plot(timeref, datadiffs[:,5],'r', lw=2, label='Hz')
ylabels = ['$E_x$, difference [%]', '$H_x$, difference [%]', '$E_y$, difference [%]', '$H_y$, difference [%]', '$E_z$, difference [%]', '$H_z$, difference [%]']
for i, ax in enumerate(fig2.axes):
ax.set_ylabel(ylabels[i])
ax.set_xlim(0, np.amax(timetest))
ax.grid()
# Save a PDF/PNG of the figure
savename = os.path.join(basepath, model + os.path.sep + model)
#fig1.savefig(savename + '.pdf', dpi=None, format='pdf', bbox_inches='tight', pad_inches=0.1)
#fig2.savefig(savename + '_diffs.pdf', dpi=None, format='pdf', bbox_inches='tight', pad_inches=0.1)
fig1.savefig(savename + '.png', dpi=150, format='png', bbox_inches='tight', pad_inches=0.1)
fig2.savefig(savename + '_diffs.png', dpi=150, format='png', bbox_inches='tight', pad_inches=0.1)
stoptime = perf_counter()
# Summary of results
passed = 0
for name, data in testresults.items():
if 'analytical' in name:
if data['Pass']:
print(Fore.GREEN + "Test '{}.in' using v.{} compared to analytical solution passed. Maximum difference = {}%".format(name, data['Test version'], data['Max diff']) + Style.RESET_ALL)
passed += 1
else:
print(Fore.RED + "Test '{}.in' using v.{} compared to analytical solution failed. Maximum difference = {}%".format(name, data['Test version'], data['Max diff']) + Style.RESET_ALL)
else:
if data['Pass']:
print(Fore.GREEN + "Test '{}.in' using v.{} compared to reference solution using v.{} passed. Maximum difference = {}%".format(name, data['Test version'], data['Ref version'], data['Max diff']) + Style.RESET_ALL)
passed += 1
else:
print(Fore.RED + "Test '{}.in' using v.{} compared to reference solution using v.{} failed. Maximum difference = {}%".format(name, data['Test version'], data['Ref version'], data['Max diff']) + Style.RESET_ALL)
print('{} of {} tests passed successfully in [HH:MM:SS]: {}'.format(passed, len(testmodels), datetime.timedelta(seconds=int(stoptime - starttime))))